Chapter 1 The material basis of genetic information

Homework 1-1

1、单选题:
​The HGP (Human Genome Project) was finished in:​
选项:
A: 1990
B: 2001
C: 2008
D: 2006
答案: 【 2006

2、单选题:
‎Which of the following technique is developed by Paul Berg who is named as “the father of modern genetic engineering”:‍
选项:
A: Technique of hybridization.
B: Technique of recombination DNA.
C: Technique of monoclonal antibody. 
D: PCR
答案: 【 Technique of recombination DNA.

3、单选题:
‌Which one in the following can be used for DNA sequencing:​
选项:
A: Gersang method.
B: X-ray diffraction method.
C: Sanger dideoxy-mediated chain termination method.
D: Site-mutagenesis. 
答案: 【 Sanger dideoxy-mediated chain termination method.

4、单选题:
‏Two important experiments to prove that DNA is genetic material are: virulence transformation experiment of Diplococcus pneumonia and infection experiment of T2 phage to E.coli. The key point of these two experiments is:​
选项:
A: DNA isolated from infected organisms can be used as pathogenic agents.
B: It is DNA mutation that cause the loss of virulence. 
C: Foreign DNA (not protein) absorbed by organisms changed genetic potency. 
D: DNA cannot be transferred between different organisms, so it must be a very conservative molecule.
答案: 【 Foreign DNA (not protein) absorbed by organisms changed genetic potency. 

5、单选题:
‏In 1953, Watson and Crick found that:‍
选项:
A: Two polynucleotide chains form double helix structure of DNA by hydrogen bond linkage
B: DNA replication is semi-conservative and usually form heteroduplex DNA consisted of one parental chain and one daughter chain
C: Three continuous nucleic acids consist of a genetic code
D: Genetic material is usually DNA instead of RNA
答案: 【 Two polynucleotide chains form double helix structure of DNA by hydrogen bond linkage

6、单选题:
‍The finding of Okazaki fragments proves that the replication of DNA is:‏
选项:
A: semi-conservative replication.
B: continuous replication.
C: indirect replication.
D: semi-continuous replication.
答案: 【 semi-continuous replication.

7、单选题:
‌7.Based on “Central Dogma”, the direction to pass biological information is:‍
选项:
A: DNA>Protein>RNA
B: RNA>DNA> Protein
C: DNA>RNA> Protein
D: Protein >DNA>RNA
答案: 【 DNA>RNA> Protein

Homework 1-2

1、单选题:
‏The basic component of nucleic acid is: ‍
选项:
A: phosphate and ribose
B: nucleoside and nitrogen bases
C: mononucleotide
D: deoxyribose and nitrogen bases
答案: 【 mononucleotide

2、单选题:
‎To form a nucleic acid, the linkage between nucleotides is: ​
选项:
A: glycosidic bond
B: hydrogen bond
C: 3’, 5’-phosphodiester
D: peptide bond
答案: 【 3’, 5’-phosphodiester

3、单选题:
The content of which chemical elements is usually constant in a nucleic acid:​
选项:
A: C
B: O
C: N
D: P
答案: 【 P

4、单选题:
Which of the following is not included in a nucleic acid:‌
选项:
A: C
B: O
C: N
D: S
答案: 【 S

5、单选题:
Which of the following bases is not included either in DNA nor RNA:‏
选项:
A: adenine
B: xanthine
C: thymine
D: uracil
答案: 【 xanthine

6、单选题:
In the free nucleotide, phosphate group is usually located in:‍
选项:
A: C2 of five-carbon sugar 
B: C3 of five-carbon sugar 
C: C4 of five-carbon sugar 
D: C5 of five-carbon sugar
答案: 【 C5 of five-carbon sugar

7、单选题:
When DNA is completely hydrolyzed, the products are:‏
选项:
A: ribose and phosphate 
B: deoxyribose and bases 
C: ribose, phosphate and bases  
D: deoxyribose, phosphate and bases
答案: 【 deoxyribose, phosphate and bases

8、单选题:
When DNA and RNA is completely hydrolyzed, the products are:‏
选项:
A: different sugar and partly different bases
B: different sugar but same bases 
C: same sugar and same bases
D: different sugar and completely different bases
答案: 【 different sugar and partly different bases

9、单选题:
Which of the following is not included in DNA:‏
选项:
A: dAMP  
B: dGMP
C: dCMP
D: dUMP
答案: 【 dUMP

10、单选题:
The linkage between five-carbon sugar (shorted as R), bases (shorted as N) and phosphate (shorted as P) in a nucleic acid is: ‍
选项:
A: N-R-P
B: N-P-R
C: P-N-R
D: R-N-P
答案: 【 N-R-P

11、单选题:
Basically, the primary structure of a nucleic acid is:‎
选项:
A: the sequence of bases in the polynucleotide chain
B: the way of bases pairing in the polynucleotide chain
C: the ratio of bases in the polynucleotide chain
D: the way of coiling and folding in the polynucleotide chain
答案: 【 the sequence of bases in the polynucleotide chain

12、单选题:
What force holds complementary base pairs together in the nucleic acid: ‌
选项:
A: hydrogen bond
B: glycosidic bond
C: phosphodiester
D: peptide bond
答案: 【 hydrogen bond

Homework 1-3

1、单选题:
About the secondary structure of DNA, which one is false: ‌
选项:
A: Three hydrogen bond are formed between A and T, two hydrogen bond are formed between G and C. 
B: Nitrogen base groups face the inside of double helix in DNA.
C: There is base stacking force between base pairs.
D: Two strands are oppositely oriented.
答案: 【 Three hydrogen bond are formed between A and T, two hydrogen bond are formed between G and C. 

2、单选题:
Which is the main form of DNA naturally:‏
选项:
A: A-DNA
B: B-DNA
C: E-DNA
D: Z-DNA
答案: 【 B-DNA

3、单选题:
The secondary structure of DNA is: ‌
选项:
A: α- helix
B: β- sheet
C: β- turn
D: double helix 
答案: 【 double helix 

4、单选题:
Which of the following is false about the content of bases in DNA:‍
选项:
A: A+T=C+G
B: A+G=C+T
C: G=C
D: A=T
答案: 【 A+T=C+G

5、单选题:
Which of the following is not included in DNA:‌
选项:
A: phosphodiester
B: glycosidic bond
C: hydrogen bond
D: disulfide bond
答案: 【 disulfide bond

6、单选题:
Which of the following is false about the double helix structure of DNA:‎
选项:
A: Nitrogen bases are strictly paired in double helix.
B: The sugar and phosphate groups face outward of double helix.
C: Base plane is perpendicular to the central axis.
D: DNA is found in the right-handed configuration in all organisms.
答案: 【 DNA is found in the right-handed configuration in all organisms.

7、单选题:
Basically, the primary structure of a nucleic acid is:‍
选项:
A: the sequence of bases in the polynucleotide chain
B: the way of bases pairing in the polynucleotide chain
C: the way of coiling and folding in the polynucleotide chain
D: the linkage between groups in polynucleotide chain
答案: 【 the sequence of bases in the polynucleotide chain

8、单选题:
Which of the following is false about the structure of nucleic acid:‏
选项:
A: There are major and minor grooves in the surface of double helix. 
B: Base stacking force exists between neighboring base pairs in double helix DNA.
C: Double helix structure only exist in DNA.
D: Double helix structure can also exist in RNA.
答案: 【 Double helix structure only exist in DNA.

9、多选题:
The force contributing to DNA stability mainly include:‍
选项:
A: phosphodiester
B: hydrogen bond between base pairs
C: base stacking force
D: the repulsive force of negatively charged phosphate backbone
答案: 【 hydrogen bond between base pairs;
base stacking force

10、多选题:
Which of the following is right about the double helix structure of DNA:‍
选项:
A: A=T
B: Nitrogen bases face the inside of double helix in DNA
C: 10bp per turn, the pitch is 3.4nm in double helix.
D: Horizontally, DNA stability is maintained by hydrogen bond between base pairs. 
答案: 【 A=T;
Nitrogen bases face the inside of double helix in DNA;
10bp per turn, the pitch is 3.4nm in double helix.;
Horizontally, DNA stability is maintained by hydrogen bond between base pairs. 

11、多选题:
Which of the following is correct about the nitrogen bases in DNA:​
选项:
A: A=G, C=T
B: The composing and ratio of bases in DNA is different in different organisms.
C: The composing and ratio of bases in DNA is different in different organs of one organism. 
D: The composing of bases in DNA is constant with the age increase.
答案: 【 The composing and ratio of bases in DNA is different in different organisms.;
The composing of bases in DNA is constant with the age increase.

Homework 1-4

1、单选题:
Which the following is false about the tertiary structure of DNA:‍
选项:
A: Supercoil
B: Loops formed within a single strand of DNA
C: Concatenated circle in circular DNA
D: Double helix of DNA
答案: 【 Double helix of DNA

2、单选题:
Which the following is false about the supercoil structure of DNA:‎
选项:
A: It’s the character of closed circular DNA (Once a single strand or double strands break, the supercoil of DNA is destroyed) 
B: Topoisomerases in the cell can regulate the level of supercoil of DNA.
C: The formation of DNA supercoil needs DNA ligase.
D: Almost all DNA molecules in the cell is negatively supercoiled.
答案: 【 The formation of DNA supercoil needs DNA ligase.

3、单选题:
Which the following is correct about the topoisomerase II:​
选项:
A: It can break the glycosidic bond in DNA double strands.
B: It doesn’t consume ATP when it works.
C: It can increase the number of negatively supercoiled DNA.
D: It can stabilize the topological structure of DNA molecule.
答案: 【 It can increase the number of negatively supercoiled DNA.

4、单选题:
A circular DNA with B form reduces its crossing number by 1 with the help of topoisomerase I, then which the following is false:​
选项:
A: The linking number of this DNA is reduced by 1.
B: No ATP is consumed in this process.
C: This DNA can maintain its relaxed B form.
D: A negatively supercoiled DNA would be formed if it maintains its relaxed B form. 
答案: 【 This DNA can maintain its relaxed B form.

Homework 1-5

1、单选题:
Which is the maximum UV absorption wavelength of nucleic acids: ‏
选项:
A: 280nm
B: 260nm
C: 240nm
D: 220nm
答案: 【 260nm

2、单选题:
Which of the following statement is correct about the reason that nucleic acid has the ability to absorb UV:‏
选项:
A: The conjugated double bond between purine and pyrimidine
B: Ribose is connected to purine and pyrimidine
C: There are nitrogen atoms inside purine and pyrimidine
D: Ribose and phosphate is connected to purine and pyrimidine
答案: 【 The conjugated double bond between purine and pyrimidine

3、单选题:
DNA denaturation refer to:‌
选项:
A: Depolymeriztion of polynucleotide chains
B: DNA molecule turns to double helix from supercoil
C: The phosphodiester bond in the DNA molecule has been broken
D: The hydrogen bond between bases has been broken
答案: 【 The hydrogen bond between bases has been broken

4、单选题:
‍The hybridization of nucleic acid could happen between DNA and RNA, DNA and DNA, then, which of the following RNA sequence could hybridize with single strand DNA with sequence 5’-CGGTA-3’:‌
选项:
A: 5’-UACCG-3’
B: 5’-GCCAU-3’
C: 5’-GCCUU-3’
D: 5’-AUCCG-3’
答案: 【 5’-UACCG-3’

5、单选题:
Which of the following DNA molecule has a relatively higher Tm value?‍
选项:
A: 5’-ATATCATATGATATGTA-3’
B: 5’-CGGTACTCGTGCAGGT-3’
C: 5’-CGGTATTCGTGCAGGT-3’
D: 5’-CCGTACTCGTGCAGGT-3’
答案: 【 5’-CGGTACTCGTGCAGGT-3’

6、多选题:
Which of the following statements are correct about Tm value of DNA:‎
选项:
A: It is directly related to the bases sequence order of DNA 
B: It is related to the length of DNA
C: It is directly proportional to the percentage of G-C base pairs
D: The higher G+C/A+T value is, the higher Tm value is 
答案: 【 It is related to the length of DNA;
It is directly proportional to the percentage of G-C base pairs;
The higher G+C/A+T value is, the higher Tm value is 

7、多选题:
Under the melting temperature, what happened to the DNA double helix:‏
选项:
A: The double helix has been untied completely
B: The double helix has been untied about 50%
C: The UV absorption at 260nm increased
D: Part of hydrogen bonds between bases have been broken 
答案: 【 The double helix has been untied about 50%;
The UV absorption at 260nm increased;
Part of hydrogen bonds between bases have been broken 

8、多选题:
Which of the following reactions are included in renaturation process:‏
选项:
A: The formation of the hydrogen bond
B: The formation of the phosphodiester bond 
C: The formation of the phosphoester bond
D: The formation of the base stacking force
答案: 【 The formation of the hydrogen bond;
The formation of the base stacking force

9、多选题:
Which of the following statement about DNA renaturation is correct:‌
选项:
A: The renaturation takes place among two complementary strands of the denatured DNA molecule
B: The bigger of the DNA molecule is, the longer of the renaturation time will be
C: The heat-denatured DNA would renature only if it is cooled down slowly  
D: The denaturation could happen among DNA and RNA strands
答案: 【 The renaturation takes place among two complementary strands of the denatured DNA molecule;
The bigger of the DNA molecule is, the longer of the renaturation time will be;
The heat-denatured DNA would renature only if it is cooled down slowly  

10、多选题:
​Which of the following statement about nucleic acid hybridization is correct:‎
选项:
A: It could happen between two DNA strands from different sources 
B: It could happen between DNA and RNA strands from different sources
C: Hybridization process is based on the DNA denaturation and renaturation
D: The hybridization techniques could be used to study the structure and function of nucleic acids.
答案: 【 It could happen between two DNA strands from different sources ;
It could happen between DNA and RNA strands from different sources;
Hybridization process is based on the DNA denaturation and renaturation;
The hybridization techniques could be used to study the structure and function of nucleic acids.

Homework 1-6

1、单选题:
What is the purpose of using liquid nitrogen to freeze and grind the sample during genome extraction of plants:​
选项:
A: complete grinding of the sample
B: polysaccharide precipitation 
C: protein denaturation
D: DNA precipitation
答案: 【 complete grinding of the sample

2、单选题:
What is the function of CTAB in the genome extraction of plants:‏
选项:
A: complete grinding of the sample
B: polysaccharide precipitation 
C: protein denaturation
D: DNA precipitation 
答案: 【 polysaccharide precipitation 

3、单选题:
What is the purpose of adding organic solvent mixture of phenol/chloroform/isoamyl alcohol during genome extraction:‎
选项:
A: complete grinding of the sample
B: polysaccharide precipitation
C: protein denaturation
D: DNA precipitation
答案: 【 protein denaturation

4、单选题:
What is the purpose of adding isopropanol:‎
选项:
A: complete grinding of the sample
B: polysaccharide precipitation 
C: protein denaturation
D: DNA precipitation and elimination of small RNA molecules
答案: 【 DNA precipitation and elimination of small RNA molecules

5、单选题:
Which of following is the best choice for storage of extracted DNA sample:​
选项:
A: ultrapure water
B:  TE buffer
C: 75% ethanol
D: TBE buffer
答案: 【  TE buffer

6、单选题:
Which of the following statement is correct about DNA agarose gel electrophoresis:​
选项:
A: When melting the gel, it has to be heated thoroughly, with boiling for a while, then stop heating to transfer the melted gel into the gel tank.
B: The DNA bands could be observed directly after gel electrophoresis, since the loading buffer contains indicator.
C: Linear DNA molecules with different length hold different electrophoretic mobility.
D: DNA molecules with same length hold the same electrophoretic mobility.
答案: 【 Linear DNA molecules with different length hold different electrophoretic mobility.

Chapter 2 From gene to chromosomes

Homework 2-1

1、单选题:
‏Which of the following statement about a gene is NOT true:​
选项:
A: The whole DNA sequence responsible for synthesis of a functional protein or RNA molecule.
B: Polynucleotide sequence of DNA molecule that contains specific genetic information.
C: The minimal functional unit of genetic material.
D: The gene sequence consists of continuously arranged triplet codes.
答案: 【 The gene sequence consists of continuously arranged triplet codes.

2、单选题:
‏Which is correct about organelle genome:​
选项:
A: Several copies of the gene can be included in one organelle.
B: Consists of several chromosome.
C: Contains numerous short repeated DNA sequences.
D: DNA molecule in mitochondria and chloroplast is usually packaged with histones, to form chromatin structure. 
答案: 【 Several copies of the gene can be included in one organelle.

3、单选题:
​Which of the following is NOT the characteristic of eukaryotic genome:‍
选项:
A: The genome of eukaryotes is much bigger than that of prokaryotes, with multiple replication origins, and the length of each replica is smaller in eukaryotes.
B: Somatic cell is usually the diploid cell with two copies of homologous genome.
C: The number of coding region is more than non-coding region.
D: The eukaryotic genes are usually discontinuous split genes consisting of exons and introns. 
答案: 【 The number of coding region is more than non-coding region.

4、单选题:
‏Which of the following is NOT the focus of human structural genomics:​
选项:
A: Genetic map
B: Transcription map
C: Physical map
D: Analysis of gene function
答案: 【 Analysis of gene function

5、单选题:
‎Which of the following statement is the characteristic of prokaryotic genome:‌
选项:
A: Contains multiple DNA replication origins.
B: Single chromosome, always circular.
C: Chromosomal DNA is always fixed to binding proteins.
D: Consists of numerous non-coding sequences. 
答案: 【 Single chromosome, always circular.

6、多选题:
‌The genome of the virus can be:‏
选项:
A: dsDNA
B: ssDNA
C: dsRNA
D: ssRNA
答案: 【 dsDNA;
ssDNA;
dsRNA;
ssRNA

7、判断题:
‏A gene is the DNA sequence encoding proteins (enzymes).‏
选项:
A: 正确
B: 错误
答案: 【 错误

8、判断题:
‌The chemical basis of most genes in nature is DNA.‎
选项:
A: 正确
B: 错误
答案: 【 正确

9、判断题:
‏A split gene refers to that two genes are separated by some non-coding DNA sequences.‍
选项:
A: 正确
B: 错误
答案: 【 错误

10、判断题:
‎Plasmid contains origin of replication and can replicates independently in the host cell.‏
选项:
A: 正确
B: 错误
答案: 【 正确

11、判断题:
​Chromosomal DNA of the eukaryotes is circular in cell.‌
选项:
A: 正确
B: 错误
答案: 【 错误

Homework 2-2

1、单选题:
The length of DNA fragment in each nucleosome is about: ​
选项:
A: 100bp 
B: 200bp
C: 300bp
D: 400bp
答案: 【 200bp

2、单选题:
The histone with most species specificity in the nucleosome is:‏
选项:
A: H1
B: H2A
C: H3 
D: H4
答案: 【 H1

3、单选题:
The basic unit of eukaryotic chromosome is:‍
选项:
A: 30nm fiber
B: Nucleosome 
C: Core particle of nucleosome
D: Histone octamer
答案: 【 Nucleosome 

4、单选题:
Which of the following is NOT included in the core histone octamer:‏
选项:
A: H1
B: H2A
C: H3
D: H4
答案: 【 H1

5、单选题:
Which of the following statement about the nucleosome is NOT ture:‌
选项:
A: About 146bp of DNA sequence is included in each nucleosome. 
B: Consists of chromatosome and linker DNA.
C: Core histones contain H2A, H3, H4 and H2B
D: H1is linker histone.
答案: 【 About 146bp of DNA sequence is included in each nucleosome. 

6、单选题:
After DNA is packaged into nucloesome to form beads-on-a-string, the compression ratio is:​
选项:
A: 1/6 
B: 1/7
C: 1/10
D: 1/8400
答案: 【 1/7

Homework 2-3

1、单选题:
‌The main component of chromosome scaffold is‎
选项:
A: histones 
B: non-histone
C: DNA
D:  RNA
答案: 【 non-histone

2、单选题:
​The loop domains of chromosome consist of: ​
选项:
A: DNA fiber 
B: 10nm fiber 
C: 30nm fiber
D: Chromatid fiber
答案: 【 30nm fiber

3、单选题:
‏In solenoid model of chromosome, every ( ) nucleosomes per turn are included in one solenoid‍
选项:
A: 2
B: 4
C: 6
D: 8
答案: 【 6

4、单选题:
Which of the following is correct about the assembly of chromosome:‌‌
选项:
A: nucleosome→core histone octamer→solenoid→microstrip→loop domain→chromatid
B: core histone octamer→nucleosome→solenoid→loop domain→microstrip→chromatid
C: core histone octamer→nucleosome→microstrip→solenoid→loop domain→chromatid
D: core histone octamer→nucleosome→solenoid→microstrip→loop domain→chromatid
答案: 【 core histone octamer→nucleosome→solenoid→loop domain→microstrip→chromatid

5、单选题:
The relationship of chromosome and chromatin is:‎‏‎
选项:
A: They are same substance in the same period of cell cycle.
B: They are different substances with different morphologies.
C: They are same substance with same morphology.
D:  They are same substance in the different period of cell cycle.
答案: 【  They are same substance in the different period of cell cycle.

6、单选题:
DNA is compressed by ( ) folds from double strand molecule to 30nm fiber.​​​
选项:
A: 6
B: 10
C: 40
D: 240
答案: 【 40

7、单选题:
Which of the following statement is NOT true about the N terminal of histone and its modifications as well as its functions in nucleosome assembly:‏‍‏
选项:
A: The N terminal of core histone contains several amino acid residues with positive charge, which can interact with DNA molecule and stabilize the nucleosomes.
B: The Ser and Thr residues in the N terminal of core histone can be phosphorylated, to reduce the interaction of histone and DNA molecule.
C: The acetylation in the N terminal of core histone can stabilize the interaction of histone and DNA.
D: The N terminal of core histone can interact with histone octamer of the neighboring nucleosome, to stabilize 30nm fiber of chromosome. 
答案: 【 The acetylation in the N terminal of core histone can stabilize the interaction of histone and DNA.

8、多选题:
Which of the following structures or components contribute to the process that nucleosome form stable 30nm fiber.‍‎‍
选项:
A: Four-helix bundle formed by core histone. 
B: N terminal of core histone.
C: Histone H1
D: Core particle
答案: 【 N terminal of core histone.;
Histone H1

Homework 2-4

1、单选题:
Which of the following chromatin remodeling complex can make DNA molecule slide on core histone and shorten the distance of neighboring DNA.​‏​
选项:
A: NuRD family
B: ISWI family 
C: SWR1
D: SWI/SNF family
答案: 【 SWI/SNF family

2、单选题:
Which of the following statement about the location of nucleosome is NOT true:‌‏‌
选项:
A: The interactions between nucleosome and DNA are dynamic.
B: The interactions of nucleosome and DNA are not sequence specific.
C: A nucleosome consists of DNA molecule with length of at least 150bp.
D: The DNA sequences don’t affect the location of nucleosome at all.
答案: 【 The DNA sequences don’t affect the location of nucleosome at all.

3、单选题:
Which of the statement about the modification of histone is correct:‌​‌
选项:
A: The acetylation of Lyc residue in the N terminal of histone can strengthen the interaction between different histones.
B: Chromo domain can recognize the acetylation site of histone.
C: The acetylation and phosphorylation of histone reduce the affinity between histone and DNA.
D: Bromo domain can recognize the methylation site of histone.
答案: 【 The acetylation and phosphorylation of histone reduce the affinity between histone and DNA.

4、单选题:
‌Which of the following statement about the chromatin remodeling is NOT true:‍
选项:
A: It is about the change of the structure and position of chromatin. 
B: The location of nucleosome in DNA strands keeps unchanged.
C: It is closely related to the modifications in the N terminal of histone. 
D: The complex for chromatin remodeling possess ATPase activity and can break the interaction of DNA and histone.
答案: 【 The location of nucleosome in DNA strands keeps unchanged.

5、多选题:
Which of the following statements about the chromatin remodeling complex are correct: ‏
选项:
A: The chromatin remodeling complex consists of SWI/SNF, ISWI and SWR1 family.
B: The chromatin remodeling complex contains domains for recognition of modification site of histone.
C: SWR1 family can replace the H2A-H2B dimer of the nucleosome to H2A.Z-H2B dimer.
D: ISWI family can make DNA molecule slide on the core histone octamer, changing the arrangement of nucleosome and shortening the distance of neighboring DNA.
答案: 【 The chromatin remodeling complex consists of SWI/SNF, ISWI and SWR1 family.;
The chromatin remodeling complex contains domains for recognition of modification site of histone.;
SWR1 family can replace the H2A-H2B dimer of the nucleosome to H2A.Z-H2B dimer.

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